deseq2_analysis: Run DESeq2 analysis on ChIP/ATAC-seq count data
In anilchalisey/chompR: ChIP and ATAC-seq data processing pipeline
Description
Run DESeq2 analysis on ChIP/ATAC-seq count data
Usage
1
deseq2_analysis(metadata, species)
Arguments
metadata
list created by sanity_check_chip and with raw
count data stored in metadata$counts. Created as part of
run_chip
species
character string specifying the name of the species. Only
'human', and 'mouse' are supported at present. [DEFAULT = human].
anilchalisey/chompR documentation built on May 9, 2019, 3:59 a.m.
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Description
Run DESeq2 analysis on ChIP/ATAC-seq count data
Usage
1 | deseq2_analysis(metadata, species)
|
Arguments
metadata |
list created by |
species |
character string specifying the name of the species. Only
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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