build_index: Build insex for HISAT2
In anilchalisey/chompR: ChIP and ATAC-seq data processing pipeline
Description
build_index for mapping reads using HISAT2. This actually downloads the
pre-compiled index available on the HISAT2 website:
ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/data
Usage
1
build_index(species = c("human", "mouse"))
Arguments
species
character string specifying the name of the species. Only
'human', and 'mouse' are supported at present. [DEFAULT = human].
anilchalisey/chompR documentation built on May 9, 2019, 3:59 a.m.
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Description
build_index for mapping reads using HISAT2. This actually downloads the
pre-compiled index available on the HISAT2 website:
ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/data
Usage
1 | build_index(species = c("human", "mouse"))
|
Arguments
species |
character string specifying the name of the species. Only
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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