run_great: GREAT analysis
In anilchalisey/chompR: ChIP and ATAC-seq data processing pipeline
Description
Wrapper around rGREAT package to perform pathway analysis of genomic regions.
Uses the basal-plus-extension rule used as default on the GREAT website.
Usage
1
Arguments
regions
Granges object of genomic regions to submit for GREAT analysis
species
character string specifying the name of the species. Only
'human', and 'mouse' are supported at present. [DEFAULT = human].
anilchalisey/chompR documentation built on May 9, 2019, 3:59 a.m.
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Description
Wrapper around rGREAT package to perform pathway analysis of genomic regions. Uses the basal-plus-extension rule used as default on the GREAT website.
Usage
1 |
Arguments
regions |
Granges object of genomic regions to submit for GREAT analysis |
species |
character string specifying the name of the species. Only
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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