legend_custom: Node color

In anna-pacinkova/intomics_package: Integrative analysis of multi-omics data to infer regulatory networks

Node color

Description

legend_custom Determines the color scale for each modality.

Usage

legend_custom(net)

Arguments

net	list output from the trace_plots function.

Value

Figure with color key

Examples

data(list=c("PK", "TFtarg_mat", "annot", "gene_annot", "layers_def",
"omics"), package="IntOMICS")
OMICS_mod_res <- OMICS_module(omics = omics, PK = PK, 
     layers_def = layers_def, TFtargs = TFtarg_mat, annot = annot, 
     r_squared_thres = 0.3, lm_METH = TRUE)
BN_mod_res <- BN_module(burn_in = 100000, thin = 500, len = 5,
     OMICS_mod_res = OMICS_mod_res, minseglen = 50000, prob_mbr = 0.07)
res_weighted <- trace_plots(mcmc_res = BN_mod_res, figures_dir = "figures", 
     burn_in = 100000, thin = 500, gene_annot = gene_annot, PK = PK, 
     OMICS_mod_res = OMICS_mod_res, gene_ID = "gene_symbol", 
     edge_freq_thres = 0.3, TFtargs = TFtarg_mat) 
legend_custom(res_weighted)

anna-pacinkova/intomics_package documentation built on Aug. 13, 2022, 11:38 a.m.