API for annaquaglieri16/samplepower
Compute sensitivity and false positive rates for a variant call set with repsect to a truth dataset.
| Global functions | |
|---|---|
| add_log_rpkm | Source code |
| exists_with_class | Source code |
| extract_fields | Man page Source code |
| flag_variants | Man page Source code |
| get_genes_logcpm | Man page Source code |
| match_indels | Source code |
| n_normals | Source code |
| parse_gatk_coverage | Man page Source code |
| parse_pon | Man page Source code |
| parse_vaf_varscan | Source code |
| parse_vcf_output | Man page Source code |
| parse_vep_csq | Man page Source code |
| reassign_names | Man page Source code |
| sens_compute | Man page Source code |
| sensitivity_by_thresholds | Man page Source code |
| vaf_to_number | Source code |
| variants_power | Man page Source code |
