parse_vep_csq: Parse the CSQ field added to the 'VCF' file by the Variant...

Description Usage Arguments

View source: R/parse_vep_csq.R

Description

Parse the CSQ field added to the 'VCF' file by the Variant Effect Predictor

Usage

1
parse_vep_csq(vcf_path, vcf_df)

Arguments

vcf_path

path to where the '.vcf' file for one sample is saved.

vcf_df

'R' object returned by 'parse_vcf_output()' after parsing relevant fields from the 'VCF' file.


annaquaglieri16/samplepower documentation built on Nov. 7, 2019, 11:43 p.m.