View source: R/get_genes_logcpm.R
Extract logCPM and raw counts for selected genes and samples
1 | get_genes_logcpm(geneCountsPath, sample_names, genes, ncbi, label)
|
geneCountsPath |
path to '.rds' files with output from 'featureCounts' |
genes |
character vector with gene 'Symbol' to return as output |
ncbi |
data frame containing mathing 'Symbol' and 'GeneID' from NCBI. |
label |
character. Group label to assign as a column to data frame returned as output. |
sampleNames |
charatcter vector with sample names to be given as output. Sample names do not have to match exactly the column names in the 'featureCounts' output but they have at least to contain the string. |
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