get_genes_logcpm: Extract logCPM and raw counts for selected genes and samples

In annaquaglieri16/samplepower: Compute sensitivity and false positive rates for a variant call set with repsect to a truth dataset.

Description

Extract logCPM and raw counts for selected genes and samples

Usage

get_genes_logcpm(geneCountsPath, sample_names, genes, ncbi, label)

Arguments

geneCountsPath	path to '.rds' files with output from 'featureCounts'
genes	character vector with gene 'Symbol' to return as output
ncbi	data frame containing mathing 'Symbol' and 'GeneID' from NCBI.
label	character. Group label to assign as a column to data frame returned as output.
sampleNames	charatcter vector with sample names to be given as output. Sample names do not have to match exactly the column names in the 'featureCounts' output but they have at least to contain the string.

annaquaglieri16/samplepower documentation built on Nov. 7, 2019, 11:43 p.m.