Description Usage Arguments Details
View source: R/extract_fields.R
Extract specific fields from 'variant_files' that will be needed for the sensitivity analysis
1 | extract_fields(variants, label, use_transcript)
|
variants |
dataframe containing all the variants in the cohort. This is created within the 'variants_power()' function. |
label |
character. Any label to be assigned to the current run. This is passed from the argument 'down_label' when calling the 'variants_power()' function. |
use_transcript |
logical. Whether transcript information is kept in the sensitivity analysis. This will be passed from 'variants_power()' and it will be equivalent to '!TCGA'. |
It is expected that variants were annotated with the Variant Effect Predictor (VEP) https://asia.ensembl.org/info/docs/tools/vep/index.html. This function works with VEP 0.89
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