response.enrichment: Enrichment for a specified sample group in the given...

In antagomir/netresponse: Functional Network Analysis

Enrichment for a specified sample group in the given response.

Description

Calculate enrichment values for a specified sample group in the given response.

Usage

response.enrichment(
  total.samples,
  response.samples,
  annotated.samples,
  method = "hypergeometric"
)

Arguments

total.samples	All samples in the data
response.samples	Samples in the investigated subset
annotated.samples	Samples at the investigated annotation level for enrichment calculation
method	Enrichment method.

Value

List with enrichment statistics, depending on enrichment method.

Author(s)

Leo Lahti [e-mail]

References

See citation('netresponse')

See Also

order.responses

Examples

#enr <- response.enrichment(subnet.id, models, sample, response, method)

antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.