apply_gtm_per_variant: Apply GTM to individual variants

In anthony-aylward/asepirinen: Assessing allele-specific expression across multiple tissues from RNA-seq read data

Description

Apply GTM to each of a list of variants

Usage

apply_gtm_per_variant(counts, pr_beta = c(2000, 2000, 36, 12, 80, 1),
  pr_intv = rep(NA, 6), niter = 100, burnin = 10,
  two_sided = FALSE, independent = FALSE, cores = 1)

Arguments

counts	list containing allele count data for each variant
pr_beta	vector, parameters for beta priors
pr_intv	determines if domain should be truncated, by default it is not
niter	number of iterations
burnin	number of burn-in steps
two_sided	if TRUE, use two-sided beta priors
independent	independent

Value

list, the GTM result for each variant

anthony-aylward/asepirinen documentation built on May 13, 2019, 11:29 a.m.