compute_imbalance_statistics: Compute Imbalance Statistics

In anthony-aylward/callimbalance: Call allelic imbalance

Description

compute per-variant imbalance statistics, including p-values and effect sizes

Usage

compute_imbalance_statistics(counts_frame, null_shape1, null_shape2,
  lsse_shape1, lsse_shape2, minimum_coverage = 10)

Arguments

counts_frame	data frame containing allele counts
null_shape1	first shape parameter of the null distribution (from npbin)
null_shape2	second shape parameter of the null distribution (from npbin)
lsse_shape1	first shape parameter of the LSSE estimate
lsse_shape2	second shape parameter of the LSSE estimate
minimum_coverage	minimum coverage level for filtering variants

Value

data frame, including allele counts and imbalance statistics

anthony-aylward/callimbalance documentation built on May 25, 2019, 11:31 p.m.