simulateNormFactors: Simulate Normalization Factors

In aoles/DEFormats: Differential gene expression data formats converter

Simulate Normalization Factors

Description

Simulate gene-specific normalization factors for each sample of an RNA-seq experiment.

Usage

simulateNormFactors(n = 1000L, m = 6L, seed = 0L, ...)

Arguments

n	number of genes
m	number of samples
seed	a single integer value specifying the random number generator seed
...	arguments passed to matrix

Value

A matrix with n rows and m columns containing the normalization factors.

Author(s)

Andrzej Oleś <[e-mail]>, 2016-2023

See Also

simulateRnaSeqData

Examples

require("DESeq2")

## normalization factors
se = simulateRnaSeqData(output = "RangedSummarizedExperiment")

dds = DESeqDataSet(se, design = ~ condition)

normalizationFactors(dds) = simulateNormFactors()

aoles/DEFormats documentation built on April 18, 2023, 12:07 a.m.