whpt: Calculate WHPT scores

In aquaMetrics/macroinvertebratesMetrics: Macroinvertebrate Biotic indices

Calculate WHPT scores

Description

Calculate WHPT scores

Usage

whpt(
  data,
  taxon_table = macroinvertebrateMetrics::macroinvertebrateTaxa,
  names = macroinvertebrateMetrics::column_attributes$name,
  questions = c("Taxon abundance", "Taxon Abundance", "Live abundance"),
  metric_cols = macroinvertebrateMetrics::metric_cols
)

Arguments

taxon_table	Optional Dataframe with WHPT scores and taxa. Default is NULL and will use built in WHPT scores. But you could supply custom dataframe if required for experimenation/development purposes.
names	Optional, user provided list of column names different to those used in 'column_attributes' to match with input data
questions	Optional, user provided 'question' default is 'Taxon abundance', which filters only abundance values.
ecologyResults	Dataframe of taxonomic results with mandatory three columns: SAMPLE_ID Unique sample identifier RESULT Numeric abundance TAXON Character - TL2 WHPT taxon name Columns names must match these exactly, but the column order does not matter. See demoEcologyResults for example dataset.

Value

Dataframe with four columns: SAMPLE_ID, DETERMINAND, RESULT, ANALYSIS_NAME, ANALYSIS_REPNAME

Examples

metricResults <- calc_whpt(demo_data)

aquaMetrics/macroinvertebratesMetrics documentation built on Feb. 3, 2024, 2:35 a.m.