aramette/otu2ot: Calculate oligotypes for aligned FASTA sequences

The package provides R scripts to perform the oligotyping approach (http://oligotyping.org) as a way to exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa. The original oligotype paper is referenced as: Eren et al. 2013 Methods in Ecology and Evolution. 4,1111-1119. doi: 10.1111/2041-210X.12114. http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12114/pdf

Getting started

Package details

AuthorAlban Ramette
MaintainerAlban Ramette <[email protected]>
LicenseGPL-2
Version1.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("aramette/otu2ot")
aramette/otu2ot documentation built on June 3, 2017, 9:05 p.m.