aramette/otu2ot: Calculate oligotypes for aligned FASTA sequences

The package provides R scripts to perform the oligotyping approach ( as a way to exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa. The original oligotype paper is referenced as: Eren et al. 2013 Methods in Ecology and Evolution. 4,1111-1119. doi: 10.1111/2041-210X.12114.

Getting started

Package details

AuthorAlban Ramette
MaintainerAlban Ramette <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
aramette/otu2ot documentation built on May 10, 2019, 12:46 p.m.