mock.fasta: mock data for testing the oligotyping pipeline.

In aramette/otu2ot: Calculate oligotypes for aligned FASTA sequences

Description

mock fasta alignemnt as provide by the oligotyping website

Usage

data(mock.fasta)

Format

The format is: List of 2 $ Seqs.names: chr [1:2500] "Environment-02_33" "Environment-03_168" "Environment-02_160" "Environment-01_202" ... $ Seqs.only : chr [1:2500, 1:246] "g" "g" "g" "g" ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:2500] "1" "2" "3" "4" ... .. ..$ : NULL

Details

The data were produced by applying the following function: ImportFastaAlignment(File="mock-env-aligned.fasta",fixSpaceinHeaders = TRUE)

Examples

data(mock.fasta)
## maybe str(mock.fasta) ; plot(mock.fasta) ...

aramette/otu2ot documentation built on May 10, 2019, 12:46 p.m.