Files in arcolombo/junk
qusage: Quantitative Set Analysis for Gene Expression
.RData
.Rhistory
DESCRIPTION
NAMESPACE
R/.RData
R/.Rhistory
R/.aggregateGeneSetArm.R.swp
R/CombinePDF.R
R/Ni.R
R/QSarray.R
R/QSarray_plotFns.R
R/QgenFunctions.R
R/Zero.cpp
R/ZeroMin.cpp
R/absoluteTest.R
R/absoluteTest.genePvals.R
R/absoluteTest.genePvalsFAST.R
R/aggPDFModule.cpp
R/aggregateGeneSet.R
R/aggregateGeneSetArm.R
R/aggregatePDF.cpp
R/aggregategsSumSigma.cpp
R/approximatedNu.R
R/armLm.cpp
R/bayesEstimation.cpp
R/calcBayesCI.R
R/calcPCor.R
R/calcVIFArm.R
R/calcVIFarm.cpp
R/calcVIFarm_nosdalpha.cpp
R/calcVIFarm_nosdalphaalt.cpp
R/calcVIFarmalt.cpp
R/compareTwoDistsFaster.R
R/dof.cpp
R/filterGenes.R
R/getExAbs.R
R/getXcoords.R
R/homogeneityScore.R
R/lm.series.R
R/makeComparisonArm.R
R/multi_conv.R
R/newQSarray.cpp
R/newTest.cpp
R/noprobewts.cpp
R/notbayesEstimation.cpp
R/pdfScaleFactor.R
R/qusage.R
R/qusageArm.R
R/qusageCutArm.R
R/quslmFit.R
R/read.gmt.R
R/sigmaArm.cpp
R/sigmaSingle.cpp
R/sigmasCpp.cpp
R/statsLm.R
R/statslm.Fit.R
R/sumSigma.cpp
R/zeroApply.cpp
README.md
data/GeneSets.RData
data/datalist
data/fluExample.RData
data/fluVaccine.RData
demo/qusageSingleBottleNeck.pdf
inst/CITATION
inst/extdata/c2.cgp.v5.1.symbols.gmt
inst/extdata/eset.1.RData
inst/extdata/eset.2.RData
inst/extdata/eset.RData
inst/extdata/qus.RData
man/GeneSets.Rd
man/Ni.Rd
man/QSarray-class.Rd
man/absoluteTest.Rd
man/absoluteTest.genePvals.Rd
man/absoluteTest.genePvalsFAST.Rd
man/aggregateGeneSet.Rd
man/aggregateGeneSetArm.Rd
man/approximatedNu.Rd
man/calcBayesCI.Rd
man/calcPCor.Rd
man/calcVIF.Rd
man/combinePDFs.Rd
man/compareTwoDistsFaster.Rd
man/eset.full.Rd
man/filterGenes.Rd
man/fluVaccine.Rd
man/getExAbs.Rd
man/getXcoords.Rd
man/homogeneityScore.Rd
man/makeComparison.Rd
man/multi_conv.Rd
man/newQSarray.Rd
man/pVal.Rd
man/pdfScaleFactor.Rd
man/plotCIs.Rd
man/plotCIsGenes.Rd
man/plotCombinedPDF.Rd
man/plotDensityCurves.Rd
man/plotGeneSetDistributions.Rd
man/qgen.Rd
man/qsTable.Rd
man/qusage.Rd
man/qusageArm.Rd
man/qusageCutArm.Rd
man/quslmFit.Rd
man/read.gmt.Rd
src/lm.c
src/lm.o
src/speedSage.so
src/statsR.h
vignettes/CIE.Arm.Rmd
vignettes/CIE.Arm.pdf
vignettes/aggregateArm.Rmd
vignettes/aggregateArm.html
vignettes/aggregatePDF.Rmd
vignettes/calcIndividualExpression.Rmd
vignettes/calcIndividualExpression.html
vignettes/calcIndividualExpression.pdf
vignettes/makeComparisons.Rmd
vignettes/qusage.Rnw
vignettes/qusageArm.Rmd
vignettes/qusageArm.pdf
vignettes/vifArm.Rmd
vignettes/vifArm.pdf
