aggregateGeneSetArm: Combine individual gene differential expresseion for each...
In arcolombo/junk: qusage: Quantitative Set Analysis for Gene Expression
Description
Usage
Arguments
Value
Description
Combine individual gene differential expresseion for each pathway (Neg) ~ 1 minute
Usage
1
aggregateGeneSetArm(geneResults, geneSets, n.points = 2^12, silent = TRUE)
Arguments
geneResults
A QSarray object, as generated by makeComparison
geneSets
a list of pathways to be compared, each item in the list is a vector of names that correspond to the gene names from Baseline/PostTreatment
n.points
the number of points to sample the convoluted t-distribution at.
silent
If false, print a "." every fifth pathway, as a way to keep track of progress
Value
gene set aggregations
arcolombo/junk documentation built on May 10, 2019, 12:49 p.m.
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Description Usage Arguments Value
Description
Combine individual gene differential expresseion for each pathway (Neg) ~ 1 minute
Usage
1 | aggregateGeneSetArm(geneResults, geneSets, n.points = 2^12, silent = TRUE)
|
Arguments
geneResults |
A QSarray object, as generated by makeComparison |
geneSets |
a list of pathways to be compared, each item in the list is a vector of names that correspond to the gene names from Baseline/PostTreatment |
n.points |
the number of points to sample the convoluted t-distribution at. |
silent |
If false, print a "." every fifth pathway, as a way to keep track of progress |
Value
gene set aggregations
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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