argschwind/TAPseq
Targeted scRNA-seq primer design for TAP-seq

Package index
Search the argschwind/TAPseq package
Vignettes
Functions
156
Source code
32
Man pages
24
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argschwind/TAPseq: Targeted scRNA-seq primer design for TAP-seq
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API

API for argschwind/TAPseq
Targeted scRNA-seq primer design for TAP-seq

Global functions
.onAttach Source code
.onLoad Source code
TAPseq Man page
TAPseqInput Man page Source code
TsIO Man page Source code
TsIO-class Man page
TsIOList Man page Source code
TsIOList-class Man page
accessors Man page
annotate_blast_hits Source code
beads_oligo Man page
beads_oligo,TsIO-method Man page
beads_oligo<- Man page
beads_oligo<-,TsIO-method Man page
blastPrimers Man page
blastPrimers,TsIO-method Man page
blastPrimers,TsIOList-method Man page
blast_primer_seqs Source code
blast_primers Source code
bone_marrow_genex Man page
calc_coords_one_primer Source code
calc_coords_primers Source code
checkPrimers Man page
checkPrimers,TsIO-method Man page
checkPrimers,TsIOList-method Man page
check_conflict_chr Source code
check_conflict_strand Source code
check_missing_tx_id Source code
check_na_tx_id Source code
check_overlap_exons Source code
check_primers Source code
check_primers_io Source code
check_tool_installation Man page Source code
chr11_genes Man page
chr11_polyA_sites Man page
chr11_primers Man page
chr11_truncated_txs Man page
chr11_truncated_txs_seq Man page
count_primer_hits Source code
createBLASTDb Man page Source code
createIORecord Man page
createIORecord,TsIO-method Man page
createIORecord,TsIOList-method Man page
createPrimerTrack Man page
createPrimerTrack,TsIO-method Man page
createPrimerTrack,TsIOList-method Man page
create_bed_track Source code
create_excluded_regions Source code
create_primer_df Source code
designPrimers Man page
designPrimers,TsIO-method Man page
designPrimers,TsIOList-method Man page
estimateOffTargets Man page
exportPrimerTrack Man page Source code
exportPrimers Man page
extend_tx Source code
filter_3p_hits Source code
filter_off_targets Source code
find_hit_overlaps Source code
find_primer_target_genes Source code
getTxsSeq Man page
getTxsSeq,GRanges-method Man page
getTxsSeq,GRangesList-method Man page
get_beads_oligo Source code
get_gt_sequences Man page Source code
get_primer_target_genes Source code
get_primers_unique_id Source code
inferPolyASites Man page Source code
infer_pcr_products Source code
list_to_print Source code
local_maxima Source code
min_primer_region Man page
min_primer_region,TsIO-method Man page
min_primer_region<- Man page
min_primer_region<-,TsIO-method Man page
parsePrimer3Output Man page Source code
parse_primer Source code
parse_primer3_output Source code
parse_primer3_record Source code
pcr_products Man page
pcr_products,TsIO-method Man page
pcr_products,TsIOList-method Man page
pickPrimers Man page
pickPrimers,TsIO-method Man page
pickPrimers,TsIOList-method Man page
plotTargetGenes Man page Source code
polyA_site_gene Source code
primerDataFrame Man page
primerDataFrame,TsIO-method Man page
primerDataFrame,TsIOList-method Man page
primer_max_tm Man page
primer_max_tm,TsIO-method Man page
primer_max_tm<- Man page
primer_max_tm<-,TsIO-method Man page
primer_min_tm Man page
primer_min_tm,TsIO-method Man page
primer_min_tm<- Man page
primer_min_tm<-,TsIO-method Man page
primer_num_return Man page
primer_num_return,TsIO-method Man page
primer_num_return<- Man page
primer_num_return<-,TsIO-method Man page
primer_opt_tm Man page
primer_opt_tm,TsIO-method Man page
primer_opt_tm<- Man page
primer_opt_tm<-,TsIO-method Man page
primer_pairs_io Source code
print_max Source code
process_output_record Source code
product_size_range Man page
product_size_range,TsIO-method Man page
product_size_range<- Man page
product_size_range<-,TsIO-method Man page
reduce_gene Source code
reverse_primer Man page
reverse_primer,TsIO-method Man page
reverse_primer<- Man page
reverse_primer<-,TsIO-method Man page
selectTargetGenes Man page Source code
sequence_id Man page
sequence_id,TsIO-method Man page
sequence_id,TsIOList-method Man page
sequence_id<- Man page
sequence_id<-,TsIO-method Man page
sequence_template Man page
sequence_template,TsIO-method Man page
sequence_template,TsIOList-method Man page
tapseq_primers Man page
tapseq_primers,TsIO-method Man page
tapseq_primers,TsIOList-method Man page
target_annot Man page
target_annot,TsIO-method Man page
target_annot,TsIOList-method Man page
target_annot<- Man page
target_annot<-,TsIO-method Man page
target_sequence Man page
target_sequence,TsIO-method Man page
target_sequence,TsIOList-method Man page
target_sequence<- Man page
target_sequence<-,TsIO-method Man page
truncateTxsPolyA Man page
truncateTxsPolyA,GRanges-method Man page
truncateTxsPolyA,GRangesList-method Man page
truncate_tx_polyA Source code
undo_unique_primer_ids Source code
argschwind/TAPseq documentation built on Feb. 9, 2024, 8:20 p.m.

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