argschwind/TAPseq: Targeted scRNA-seq primer design for TAP-seq

Design primers for targeted single-cell RNA-seq used by TAP-seq. Create sequence templates for target gene panels and design gene-specific primers using Primer3. Potential off-targets can be estimated with BLAST. Requires working installations of Primer3 and BLASTn.

Getting started

Package details

Bioconductor views CRISPR PooledScreens Sequencing SingleCell Technology
Maintainer
LicenseMIT + file LICENSE
Version1.1.1
URL https://github.com/argschwind/TAPseq
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("argschwind/TAPseq")
argschwind/TAPseq documentation built on Aug. 15, 2020, 2:32 p.m.