Files in argschwind/TAPseq
Targeted scRNA-seq primer design for TAP-seq
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/TAPseq.R
R/TsIO_classes.R
R/blast_primers.R
R/check_primers.R
R/data.R
R/export_primers.R
R/get_txs_seq.R
R/onLoad.R
R/pick_primers.R
R/polyA_from_dropseq.R
R/primer3_io.R
R/select_target_genes.R
R/sysdata.rda
R/tapseq_input.R
R/transcript_model_utils.R
R/truncate_txs_polyA_sites.R
README.md
data-raw/bone_marrow_genex.R
data-raw/chr11_genes.R
data-raw/chr11_polyA_sites.R
data-raw/chr11_primers.R
data-raw/chr11_truncated_txs.R
data-raw/chr11_truncated_txs_sequences.R
data-raw/internal_vignette_data.R
data/bone_marrow_genex.rda
data/chr11_genes.rda
data/chr11_polyA_sites.rda
data/chr11_primers.rda
data/chr11_truncated_txs.rda
data/chr11_truncated_txs_seq.rda
inst/CITATION
inst/extdata/chr11_k562_dropseq.bam
inst/extdata/chr11_k562_dropseq.bam.bai
man/TAPseq.Rd
man/TAPseqInput.Rd
man/TsIO-class.Rd
man/TsIOList-class.Rd
man/accessors.Rd
man/bone_marrow_genex.Rd
man/checkPrimers.Rd
man/check_tool_installation.Rd
man/chr11_genes.Rd
man/chr11_polyA_sites.Rd
man/chr11_primers.Rd
man/chr11_truncated_txs.Rd
man/chr11_truncated_txs_seq.Rd
man/createIORecord.Rd
man/designPrimers.Rd
man/estimateOffTargets.Rd
man/exportPrimers.Rd
man/getTxsSeq.Rd
man/get_gt_sequences.Rd
man/inferPolyASites.Rd
man/parsePrimer3Output.Rd
man/pickPrimers.Rd
man/selectTargetGenes.Rd
man/truncateTxsPolyA.Rd
tests/testthat.R
tests/testthat/test_TsIO_classes.R
tests/testthat/test_blast_primers.R
tests/testthat/test_check_primers.R
tests/testthat/test_export_primers.R
tests/testthat/test_get_txs_seq.R
tests/testthat/test_polyA_from_dropseq.R
tests/testthat/test_primer3_io.R
tests/testthat/test_tapseq_input.R
tests/testthat/test_truncate_txs_polyA_sites.R
vignettes/.gitignore
vignettes/tapseq_primer_design.Rmd
vignettes/tapseq_target_genes.Rmd
