Man pages for argschwind/TAPseq
Targeted scRNA-seq primer design for TAP-seq
| accessors | Accessors for TsIO objects |
| bone_marrow_genex | Mouse bone marrow 10x data |
| checkPrimers | Check primers for complementarity |
| check_tool_installation | Check required tools |
| chr11_genes | Chromosome 11 genes |
| chr11_polyA_sites | Chromosome 11 polyA sites |
| chr11_primers | Chromosome 11 primers |
| chr11_truncated_txs | Chromosome 11 truncated transcripts |
| chr11_truncated_txs_seq | Chromosome 11 truncated transcript sequences |
| createIORecord | Create boulder IO record |
| designPrimers | Design primers |
| estimateOffTargets | Estimate primer off-targets using BLAST |
| exportPrimers | Export TAP-seq primers |
| get_gt_sequences | Get genome and transcriptome sequences |
| getTxsSeq | Get transcript sequences |
| inferPolyASites | Infer polyA sites from droplet sequencing data |
| parsePrimer3Output | Parse Primer3 Output |
| pickPrimers | Pick best TAP-seq primers |
| selectTargetGenes | Select target genes |
| TAPseq | TAPseq: R-package to design primers for TAP-seq |
| TAPseqInput | Create TAPseq input from target sequences |
| truncateTxsPolyA | Truncate transcripts at polyA sites |
| TsIO-class | TsIO class |
| TsIOList-class | TsIOList class |
