plot_lengths: Wrapper function to plot tandem repeat lengths for multiple...
In arnederoeck/NanoSatelliteR: QC, plotting, and clustering of tandem repeat segmentation created by NanoSatellite.
Description
Usage
Arguments
Examples
View source: R/NanoSatelliteR_functions.R
Description
plot_lengths() returns a ggplot2 based plot with each sample in a
panel, the number of tandem repeat units on the y-axis, and colored
dots corresponding to positive (red) and negative (blue) DNA strands
Usage
1
plot_lengths(df, binwidth = 5)
Arguments
df
data.frame generated by load_summary(), or qual_reads()
binwidth
A numeric value passed on to geom_dotplot()
Examples
1
2
3
4
df <- load_summary("/storage/NanoSatellite_chunks/")
qc <- summary_qc(df)
df2 <- qual_reads(df,qc$center_cutoff)
plot_lengths(df2)
arnederoeck/NanoSatelliteR documentation built on May 6, 2019, 1:35 a.m.
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Description Usage Arguments Examples
View source: R/NanoSatelliteR_functions.R
Description
plot_lengths() returns a ggplot2 based plot with each sample in a panel, the number of tandem repeat units on the y-axis, and colored dots corresponding to positive (red) and negative (blue) DNA strands
Usage
1 | plot_lengths(df, binwidth = 5)
|
Arguments
df |
data.frame generated by load_summary(), or qual_reads() |
binwidth |
A numeric value passed on to geom_dotplot() |
Examples
1 2 3 4 | df <- load_summary("/storage/NanoSatellite_chunks/")
qc <- summary_qc(df)
df2 <- qual_reads(df,qc$center_cutoff)
plot_lengths(df2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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