GFPip_pep: GFPip_pep - Peptides table of the GFPip dataset
In arnesmits/DEPstoi: Stoichiometry analysis of label-free proteomics data

The GFPip_pep object contains the identified peptides of the GFPip dataset. The dataset contains the peptides table from MaxQuant

GFPip_pep

A data.frame with 12750 observations and 29 variables:

Sequence: Peptide sequence
Mass: Mass of peptide (Da)
Proteins: Uniprot IDs of proteins to which the peptide is matched
Leading.razor.protein: Uniprot ID of the main protein
Gene.names: Gene names of proteins to which the peptide is matched
Unique..Groups.: Whether the peptide is unique to the protein group to which the peptide is matched
Unique..Proteins.: Whether the peptide is unique to the protein in the complete database
Charges: Peptide charge
PEP: Posterior Error Probability of the identification
Score: Andromeda score
Reverse: The peptide is identified in the decoy database if marked ('+')
Contaminant: The peptide is a known contaminant if marked ('+')
id: The peptide ID
Protein.group.IDs: The protein group ID of the protein to which the peptide is matched

A data.frame.

Kloet et al (2016). The dynamic interactome and genomic targets of Polycomb complexes during stem-cell differentiation. Nature Structural & Molecular Biology 23(7): 682-90. doi: 10.1038/nsmb.3248

arnesmits/DEPstoi documentation built on May 3, 2019, 4:31 p.m.