GADMagreeer: Processes GADM1 and GADM2 entries Processes GADM1 and GADm2...

In arranhamlet/popvac_package: Generate population level vaccination data from a csv template.

Description

Processes GADM1 and GADM2 entries Processes GADM1 and GADm2 entries and combines them ready to implement vaccination coverage. Takes the initial information to generate population and vaccination arrays for the desired countries. Only inputs the EPI coverage for vaccination and sets it up for the addition of vaccination campaigns.

Usage

GADMagreeer(campaigncsv, scenario = "base", GAVI.switch = "base",
  skew = 0, genvals, countryiso)

Arguments

campaigncsv	The csv file containing the vaccination campaigns produced by the function format_csv.
scenario	This changes the underlying assumptions of the population size. Base does nothing, "hiCov" reduces the population by 25 percent, "loCov" increases the population by 25 percent.
GAVI.switch	This implements different vaccination campaigns based on the column "scenario" in the campaigncsv parameter. "-all.epi" ignores the contribution of epi, "5year.mass" implements five year mass vaccination campaigns,"epi90" does...something?,"+fut.epi" includes future epi coverage.
skew	This affects how vaccination campaigns are applied. If the skew is set to -1 then campaigns are applied to the whole population, regardless of prior vaccination status. If the skew is set to 0 then campaigns are applied only to the unvaccinated population.
genvals	This is the output from popandvac
shp2	This is a second administrative division shapefule that contains all the countries you want to generate population vaccination coverage for.

Examples

GADMagreeer(campaigncsv)

arranhamlet/popvac_package documentation built on May 10, 2019, 1:48 p.m.