popandvac: Generates population and vaccination arrays Takes the initial...

In arranhamlet/popvac_package: Generate population level vaccination data from a csv template.

Description

Generates population and vaccination arrays Takes the initial information to generate population and vaccination arrays for the desired countries. Only inputs the EPI coverage for vaccination and sets it up for the addition of vaccination campaigns.

Usage

popandvac(epi, popdf, countryiso, shplist, scenario = "base",
  GAVI.switch = "base", skew = 0)

Arguments

epi	This is a csv containing the routine infant immunization coverage for all the countries you want to generate population vaccination coverage for.
popdf	The csv file generated by the function csv_to_adm2pop csv_to_adm2pop
countryiso	This is a vector of the ISO codes for all countries you want to generate population vaccination coverage for. #@param shp0 This is a country level shapefule that contains all the countries you want to generate population vaccination coverage for. #@param shp1 This is a first administrative division shapefule that contains all the countries you want to generate population vaccination coverage for.
scenario	This changes the underlying assumptions of the population size. Base does nothing, "hiCov" reduces the population by 25 percent, "loCov" increases the population by 25 percent.
GAVI.switch	This implements different vaccination campaigns based on the column "scenario" in the campaigncsv parameter. "-all.epi" ignores the contribution of epi, "5year.mass" implements five year mass vaccination campaigns,"epi90" does...something?,"+fut.epi" includes future epi coverage.
skew	This affects how vaccination campaigns are applied. If the skew is set to -1 then campaigns are applied to the whole population, regardless of prior vaccination status. If the skew is set to 0 then campaigns are applied only to the unvaccinated population.
shp2	This is a second administrative division shapefule that contains all the countries you want to generate population vaccination coverage for.

Examples

popandvac(epi,countryiso,shp1,shp2)

arranhamlet/popvac_package documentation built on May 10, 2019, 1:48 p.m.