Files in artaylor85/FreqEstimationModel
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
FreqEstimationModel.Rproj
Instructions
NAMESPACE
R/calculate_genotype_counts_truncated.R
R/calculate_log_genotype_counts_proposal_ratio.R
R/calculate_log_moi_proposal_ratio.R
R/compatible_genotypes.R
R/data_genotype_count_compatibility.R
R/ddirichlet.R
R/draw_frequency_proposed_child.R
R/draw_genotype_counts_initial.R
R/draw_moi_initial.R
R/draw_moi_proposed.R
R/log_likelihood_NGS.R
R/log_likelihood_prevalence.R
R/log_moi_prior_calculation_geom.R
R/log_moi_prior_calculation_nbinom.R
R/log_moi_prior_calculation_pois.R
R/log_moi_prior_calculation_unif.R
R/log_prior_moi_ratio_geom.R
R/log_prior_moi_ratio_nbinom.R
R/log_prior_moi_ratio_pois.R
R/log_prior_moi_ratio_unif.R
R/mcmc_sampling.R
R/mcmc_sampling_parallel.R
R/my_log_dmultinom.R
R/preprocess_data.R
R/rdirichlet.R
R/update_genotype_counts.R
R/update_y_mixed_add.R
R/update_y_mixed_sub.R
README.md
data/Data_no_markers1_seed1.RData
data/Data_no_markers3_seed1.RData
inst/Allele_freq_estimate_compare.R
inst/Data_no_markers1_seed2.RData
inst/Data_no_markers1_seed3.RData
inst/Data_no_markers2_seed1.RData
inst/Data_no_markers2_seed2.RData
inst/Data_no_markers2_seed3.RData
inst/Data_no_markers3_seed2.RData
inst/Data_no_markers3_seed3.RData
inst/Data_no_markers4_seed1.RData
inst/Data_no_markers4_seed2.RData
inst/Data_no_markers4_seed3.RData
inst/Data_no_markers5_seed1.RData
inst/Data_no_markers5_seed2.RData
inst/Data_no_markers5_seed3.RData
inst/Test_run.R
inst/Thesis_methods_chapter.pdf
inst/visualise_results.R
man/calculate_genotype_counts_truncated.Rd
man/calculate_log_genotype_counts_proposal_ratio.Rd
man/calculate_log_moi_proposal_ratio.Rd
man/compatible_genotypes.Rd
man/data_genotype_count_compatibility.Rd
man/ddirichlet.Rd
man/draw_frequency_proposed_child.Rd
man/draw_genotype_counts_initial.Rd
man/draw_moi_initial.Rd
man/draw_moi_proposed.Rd
man/hello.Rd
man/log_likelihood_NGS.Rd
man/log_likelihood_prevalence.Rd
man/log_moi_prior_calculation_geom.Rd
man/log_moi_prior_calculation_nbinom.Rd
man/log_moi_prior_calculation_pois.Rd
man/log_moi_prior_calculation_unif.Rd
man/log_prior_moi_ratio_geom.Rd
man/log_prior_moi_ratio_nbinom.Rd
man/log_prior_moi_ratio_pois.Rd
man/log_prior_moi_ratio_unif.Rd
man/mcmc_sampling.Rd
man/mcmc_sampling_parallel.Rd
man/my_log_dmultinom.Rd
man/preprocess_data.Rd
man/rcpp_hello.Rd
man/rdirichlet.Rd
man/update_genotype_counts.Rd
man/update_y_mixed_add.Rd
man/update_y_mixed_sub.Rd
vignettes/.gitignore
vignettes/Long_results.pdf
vignettes/Long_results.pdf.asis
vignettes/Quick_example.Rmd
