compatible_genotypes: Compatible genotypes

In artaylor85/FreqEstimationModel:

Compatible genotypes

Description

Function to ascertain the genotypes that are compatible with a given observation

Usage

compatible_genotypes(observation, as_numeric = TRUE)

Arguments

observation

A vector of allelic calls for a given individual, with one call per loci. Heteroallelic loci can either be encoded as 0.5. Alternatively, all alleles detected at heteroallelic loci can be listed. See examples below.

Examples

# Example where heteroallelic loci are encoded as 0.5
y <- c(0, 1, 0.5, 0.5)
compatible_genotypes(y)
compatible_genotypes(y, FALSE)

# Example where all alleles detected at heteroallelic loci are listed
y <- list(0, 1, c(0,1), c(0,1,2))
compatible_genotypes(y)
compatible_genotypes(y, FALSE)

artaylor85/FreqEstimationModel documentation built on Feb. 1, 2024, 6:44 p.m.