| calculate_genotype_counts_truncated | Calculate legal genotype count moves |
| calculate_log_genotype_counts_proposal_ratio | Calculate the log genotype counts proposal ratio |
| calculate_log_moi_proposal_ratio | Calculate log MOI proposal ratio |
| compatible_genotypes | Compatible genotypes |
| data_genotype_count_compatibility | Data genotype count compatibility |
| ddirichlet | Dirichlet density |
| draw_frequency_proposed_child | Draw frequency proposed child |
| draw_genotype_counts_initial | Draw initial genotype counts |
| draw_moi_initial | Draw initial MOIs |
| draw_moi_proposed | Propose MOI |
| hello | Hello, World! |
| log_likelihood_NGS | Log likelihood, NGS data |
| log_likelihood_prevalence | Log likelihood, prevalence data |
| log_moi_prior_calculation_geom | Log moi prior |
| log_moi_prior_calculation_nbinom | Log moi prior |
| log_moi_prior_calculation_pois | Log moi prior |
| log_moi_prior_calculation_unif | Log moi prior |
| log_prior_moi_ratio_geom | lLg prior MOI ratio |
| log_prior_moi_ratio_nbinom | Log prior MOI ratio |
| log_prior_moi_ratio_pois | Log prior MOI ratio |
| log_prior_moi_ratio_unif | Log prior MOI ratio |
| mcmc_sampling | MCMC |
| mcmc_sampling_parallel | MCMC |
| my_log_dmultinom | Log Multinomial Density |
| preprocess_data | Preprocess data |
| rcpp_hello | Hello, Rcpp! |
| rdirichlet | Random draw from the dirichlet |
| update_genotype_counts | Update genotype counts |
| update_y_mixed_add | Update mixed data samaple clone addition |
| update_y_mixed_sub | Update mixed data samaple clone removal |
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