Man pages for arthurvinx/transcriptogramer
Transcriptional analysis based on transcriptograms
| association | Association |
| clusterEnrichment-method | Term enrichment |
| clusterVisualization-method | Displays graphs of the differentially expressed clusters |
| connectivityProperties-method | Calculates average graph properties as function of node... |
| DE-method | Get DE |
| DEsymbols | Dictionary Protein2Symbol |
| differentiallyExpressed-method | Identify which genes are differentially expressed |
| enrichmentPlot-method | Projects Gene Ontology terms on the ordering |
| GPL570 | Dictionary Protein2Probe |
| GSE9988 | Dataset containing expression values |
| Hs700 | Ordered Homo sapiens proteins of combined score greater than... |
| Hs800 | Ordered Homo sapiens proteins of combined score greater than... |
| Hs900 | Ordered Homo sapiens proteins of combined score greater than... |
| HsBPTerms | Dictionary Protein2GO |
| Mm700 | Ordered Mus musculus proteins of combined score greater than... |
| Mm800 | Ordered Mus musculus proteins of combined score greater than... |
| Mm900 | Ordered Mus musculus proteins of combined score greater than... |
| orderingProperties-method | Calculates graph properties projected on the ordered proteins |
| radius-method | Radius |
| Rn700 | Ordered Rattus norvegicus proteins of combined score greater... |
| Rn800 | Ordered Rattus norvegicus proteins of combined score greater... |
| Rn900 | Ordered Rattus norvegicus proteins of combined score greater... |
| Sc700 | Ordered Saccharomyces cerevisiae proteins of combined score... |
| Sc800 | Ordered Saccharomyces cerevisiae proteins of combined score... |
| Sc900 | Ordered Saccharomyces cerevisiae proteins of combined score... |
| Terms-method | Get terms |
| Transcriptogram-class | Class Transcriptogram |
| transcriptogramer-package | Transcriptional analysis based on transcriptograms |
| transcriptogramPreprocess | Creates an object of class Transcriptogram |
| transcriptogramStep1-method | Calculates the average of the expression values related to... |
| transcriptogramStep2-method | Calculates the average of the expression values using a... |
