Terms-method: Get terms

In arthurvinx/transcriptogramer: Transcriptional analysis based on transcriptograms

Get terms

Description

Gets the content of the Terms slot of an object of class Transcriptogram.

Usage

Terms(object)

## S4 method for signature 'Transcriptogram'
Terms(object)

Arguments

object

An object of class Transcriptogram.

Value

This method returns the content of the Terms slot of an object of class Transcriptogram.

Author(s)

Diego Morais

See Also

differentiallyExpressed, transcriptogramPreprocess, GSE9988, GPL570, Hs900, HsBPTerms, association, transcriptogramStep1, transcriptogramStep2, clusterEnrichment

Examples

transcriptogram <- transcriptogramPreprocess(association, Hs900, 50)
## Not run: 
transcriptogram <- transcriptogramStep1(transcriptogram, GSE9988, GPL570)
transcriptogram <- transcriptogramStep2(transcriptogram)
levels <- c(rep(FALSE, 3), rep(TRUE, 3))
transcriptogram <- differentiallyExpressed(transcriptogram, levels, 0.01)
transcriptogram <- clusterEnrichment(transcriptogram, species = "Homo sapiens",
pValue = 0.005)
Terms(transcriptogram)

## End(Not run)

arthurvinx/transcriptogramer documentation built on March 21, 2023, 9:15 a.m.