connectivityProperties-method: Calculates average graph properties as function of node...

In arthurvinx/transcriptogramer: Transcriptional analysis based on transcriptograms

Calculates average graph properties as function of node connectivity

Description

Calculates network properties as function of node connectivity/degree (k), such as: probability of a protein of the graph has degree k, average assortativity of the nodes of degree k, and the average clustering coefficient of the nodes of degree k.

Usage

connectivityProperties(object)

## S4 method for signature 'Transcriptogram'
connectivityProperties(object)

Arguments

object

An object of class Transcriptogram.

Details

The assortativity of a node can be measured by the average degree of its neighbors.

Value

This method returns a data.frame containing: unique degrees (k) of the nodes of the graph, probability (pk) of a node of the graph has degree k, average assortativity (ak) of the nodes of degree k, and the average clustering coefficient (ck) of the nodes of degree k.

Author(s)

Diego Morais

See Also

transcriptogramPreprocess, Hs900, association

Examples

transcriptogram <- transcriptogramPreprocess(association, Hs900)
## Not run: 
cProperties <- connectivityProperties(transcriptogram)

## End(Not run)

arthurvinx/transcriptogramer documentation built on March 21, 2023, 9:15 a.m.