transcriptogramPreprocess: Creates an object of class Transcriptogram

In arthurvinx/transcriptogramer: Transcriptional analysis based on transcriptograms

Creates an object of class Transcriptogram

Description

Constructor for the Transcriptogram object.

Usage

transcriptogramPreprocess(association, ordering, radius = 0L)

Arguments

association	A matrix, or data.frame, containing two columns of ENSEMBL Peptide IDs (character); or the path for a file containing two columns, no header, with rows composed by the ENSEMBL Peptide IDs of two proteins that are connected.
ordering	A character vector containing ordered ENSEMBL Peptide IDs; a data.frame containing two columns, the first one with ENSEMBL Peptide IDs (character), and the second containing its respective position (non-negative integer); or the path for a file containing two columns, a row for the headers, with rows composed respectively by a ENSEMBL Peptide ID and its respective position.
radius	An non-negative integer referring to the window radius required for some methods.

Value

A preprocessed object of class Transcriptogram.

Author(s)

Diego Morais

See Also

Transcriptogram-class, association, Hs900

Examples

transcriptogram <- transcriptogramPreprocess(association, Hs900)

arthurvinx/transcriptogramer documentation built on March 21, 2023, 9:15 a.m.