Man pages for aryeelab/scmeth
Functions to conduct quality control analysis in methylation data
| bsConversionPlot | Bisulfite conversion rate visualization |
| chromosomeCoverage | CpG covergae in each chromosome |
| coverage | Coverage for single cells |
| cpgDensity | Provides Coverage by the CpG density. CpG Density is defined... |
| cpgDiscretization | Discretize the CpG methylation values to align with single... |
| downsample | Downsample analysis |
| featureCoverage | Coverage based on the genomic feature |
| mbiasplot | Methylation bias plot |
| methylationDist | Provide graphics for methylation distribution |
| readmetrics | Provide graphics for read information |
| repMask | Provides Coverage metrics in the repeat masker region |
| report | Generates an inclusive report on methylation analysis |
| scmeth | scmeth: a package to conduct quality control analysis for... |
