mbiasplot: Methylation bias plot
In aryeelab/scmeth: Functions to conduct quality control analysis in methylation data
Description
Usage
Arguments
Value
Examples
Description
Plot the methylation at each position of the read to observe any biases in
the methylation
based on the read position
Usage
1
Arguments
dir
directory name with mbias files
mbiasFiles
list of mbias files
Value
Returns a list containing the methylation across the read position in original top
and original bottom strand both in forward and reverse reads for multiple samples
Examples
1
2
mbiasFile <- '2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt'
mbiasplot(mbiasFiles=system.file("extdata", mbiasFile, package='scmeth'))
aryeelab/scmeth documentation built on June 15, 2019, 8:02 p.m.
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Description Usage Arguments Value Examples
Description
Plot the methylation at each position of the read to observe any biases in the methylation based on the read position
Usage
1 |
Arguments
dir |
directory name with mbias files |
mbiasFiles |
list of mbias files |
Value
Returns a list containing the methylation across the read position in original top and original bottom strand both in forward and reverse reads for multiple samples
Examples
1 2 | mbiasFile <- '2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt'
mbiasplot(mbiasFiles=system.file("extdata", mbiasFile, package='scmeth'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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