Files in aryeelab/scmeth
Functions to conduct quality control analysis in methylation data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/bsConversionPlot.R
R/chromosomeCoverage.R
R/coverage.R
R/cpgDensity.R
R/cpgDiscretization.R
R/downsample.R
R/featureCoverage.R
R/mbiasPlot.R
R/methylationDist.R
R/readmetrics.R
R/repMask.R
R/report.R
R/scmeth.R
README.md
inst/NEWS
inst/extdata/16_trimmed_sorted.txt
inst/extdata/2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt
inst/extdata/bismark_data/assays.h5
inst/extdata/bismark_data/se.rds
inst/extdata/bsObject.rda
inst/extdata/sc-RRBS-zygote_01.bsConv.txt
inst/extdata/sc-RRBS-zygote_01.read_metrics.txt
inst/extdata/sc-RRBS-zygote_02.bsConv.txt
inst/extdata/sc-RRBS-zygote_02.read_metrics.txt
inst/extdata/sc-RRBS-zygote_03.bsConv.txt
inst/extdata/sc-RRBS-zygote_03.read_metrics.txt
inst/extdata/sc-RRBS_zyg_01_chr1_CpG.bedGraph
inst/extdata/sc-RRBS_zyg_02_chr1_CpG.bedGraph
inst/extdata/sc-RRBS_zyg_03_chr1_CpG.bedGraph
inst/qcReport.Rmd
man/bsConversionPlot.Rd
man/chromosomeCoverage.Rd
man/coverage.Rd
man/cpgDensity.Rd
man/cpgDiscretization.Rd
man/downsample.Rd
man/featureCoverage.Rd
man/mbiasplot.Rd
man/methylationDist.Rd
man/readmetrics.Rd
man/repMask.Rd
man/report.Rd
man/scmeth.Rd
scmeth.Rproj
vignettes/my-vignette.Rmd
