Sialin6: Embryo stage: S1c17A5 gene knocked out versus wild type
In asael697/fdaRNA: RNA-Seq and Microarray Preprocessing
Description
Usage
Format
Details
Source
References
Examples
Description
Compares the gene expression profiles of 6 knocked out mice, mice for which the S1c17A5 gene has been knocked out, versus 6 wild type mice. That is, 12 microarrays divided in two groups of six, with 45,101 genes each. This is a microarray experiment that was repeated at two time points, one in day first of development during the embryo stage (after six hours).
The other, that can be found under Sialin18, at 18 days of age during the adult stage of the mice. he biology suggests that there should be small differences after just a few hours of gestation and larger differences after 18 days.
Usage
1
data("Sialin6")
Format
A data frame with 45101 observations on the following 12 variables.
X2760.CELa numeric vector
X2761.CELa numeric vector
X2762.CELa numeric vector
X2763.CELa numeric vector
X2764.CELa numeric vector
X2765.CELa numeric vector
X2766.CELa numeric vector
X2767.CELa numeric vector
X2768.CELa numeric vector
X2769.CELa numeric vector
X2770.CELa numeric vector
X2771.CELa numeric vector
Details
Variables:
Col. 1,4,6,7,9,10: X2760.CEL, X2763.CEL, X2765.CEL, X2766.CEL, X2768.CEL, X2769.CEL. Group 1
Col. 2,3,5,8,11,12: X2761.CEL, X2762.CEL, X2764.CEL, X2767.CEL, X2770.CEL, X2771.CEL. Group 2
Source
Own
References
Amaratunga D, Cabrera J, Shkedy Z. Exploration and analysis of DNA microarray and other high dimensional data. J. Wiley & Sons, 2014.
Nieto-Reyes A, Cabrera J. Statistical depth based normalization and outlier detection of gene expression data. Preprint.
Examples
1
plot_order(Sialin6, m='Sialin after 6 hours dataset')
asael697/fdaRNA documentation built on May 28, 2020, 11:32 a.m.
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Description Usage Format Details Source References Examples
Description
Compares the gene expression profiles of 6 knocked out mice, mice for which the S1c17A5 gene has been knocked out, versus 6 wild type mice. That is, 12 microarrays divided in two groups of six, with 45,101 genes each. This is a microarray experiment that was repeated at two time points, one in day first of development during the embryo stage (after six hours). The other, that can be found under Sialin18, at 18 days of age during the adult stage of the mice. he biology suggests that there should be small differences after just a few hours of gestation and larger differences after 18 days.
Usage
1 | data("Sialin6")
|
Format
A data frame with 45101 observations on the following 12 variables.
X2760.CELa numeric vector
X2761.CELa numeric vector
X2762.CELa numeric vector
X2763.CELa numeric vector
X2764.CELa numeric vector
X2765.CELa numeric vector
X2766.CELa numeric vector
X2767.CELa numeric vector
X2768.CELa numeric vector
X2769.CELa numeric vector
X2770.CELa numeric vector
X2771.CELa numeric vector
Details
Variables:
Col. 1,4,6,7,9,10: X2760.CEL, X2763.CEL, X2765.CEL, X2766.CEL, X2768.CEL, X2769.CEL. Group 1
Col. 2,3,5,8,11,12: X2761.CEL, X2762.CEL, X2764.CEL, X2767.CEL, X2770.CEL, X2771.CEL. Group 2
Source
Own
References
Amaratunga D, Cabrera J, Shkedy Z. Exploration and analysis of DNA microarray and other high dimensional data. J. Wiley & Sons, 2014.
Nieto-Reyes A, Cabrera J. Statistical depth based normalization and outlier detection of gene expression data. Preprint.
Examples
1 | plot_order(Sialin6, m='Sialin after 6 hours dataset')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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