BranchStructs: BranchStructs

Description Usage Arguments Details Value Examples

Description

BranchStructs are hand-measured branches. This is a constructor for the BranchStructs S3 object. Set column names before importing the treestruct dataframe

Usage

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BranchStructs(dataset = NA, treestructs)

Arguments

dataset

name of dataset this object is based on

treestructs

dataframe of architecture data. required.

surface_area_total

total surface area of branch

pathlen_total

total pathlength of branch (sum of branch lengths)

idcol

name of branch id column; default = "branch_code"

datecol

name of date column; default = "date"

internodeid_col

name internode id column; default = "internode_id"

parentid_col

name of parent internode id column; default = "parent_id"

furcation_col

name of furcation number column; default = "n_furcation"

length_col

name of internode length column; default = "len"

angle_col

name of angle column; default = "major_child_angle"

angle_internode1_col

name of angle internode 1 column; default = "angle_internode_1"

angle_internode2_col

name of angle internode 2 column; default = "angle_internode_2"

numnodes_col

name of number of nodes in section column; default = "number_nodes_in_section"

istip_col

name of is tip column; default = "is_tip"

isbroken_col

name of is broken column; default = "is_broken"

d_child_col

name of internode diameter @ child (top) column; default = "d_child"

d_parent_col

name of internode diameter @ parent (base) column; default = "d_parent"

Details

DETAILS

Value

OUTPUT_DESCRIPTION

Examples

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## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

ashenkin/treestruct documentation built on June 4, 2019, 5:17 p.m.