View source: R/BranchStructs.r
BranchStructs | R Documentation |
BranchStructs are hand-measured branches or trees. This is a constructor for the BranchStructs S3 object. Set column names before importing the treestruct dataframe
BranchStructs(
dataset = NA,
treestructs,
convert_to_meters = NA,
has_topology = T
)
dataset |
name of dataset this object is based on |
treestructs |
dataframe of architecture data. required. |
surface_area_total |
total surface area of branch |
pathlen_total |
total pathlength of branch (sum of branch lengths) |
idcol |
name of branch id column; default = "branch_code" |
datecol |
name of date column; default = "date" |
internodeid_col |
name internode id column; default = "internode_id" |
parentid_col |
name of parent internode id column; default = "parent_id" |
furcation_col |
name of furcation number column; default = "n_furcation" |
length_col |
name of internode length column; default = "len" |
angle_col |
name of angle column; default = "major_child_angle" |
angle_internode1_col |
name of angle internode 1 column; default = "angle_internode_1" |
angle_internode2_col |
name of angle internode 2 column; default = "angle_internode_2" |
numnodes_col |
name of number of nodes in section column; default = "number_nodes_in_section" |
istip_col |
name of is tip column; default = "is_tip" |
isbroken_col |
name of is broken column; default = "is_broken" |
d_child_col |
name of internode diameter @ child (top) column; default = "d_child" |
d_parent_col |
name of internode diameter @ parent (base) column; default = "d_parent" |
To create a branchstruct, pass a dataset with the following columns (unless you specify different column names, which is not recommended): branch_code date internode_id parent_id n_furcation (optional) len major_child_angle (optional) angle_internode_1 (optional) angle_internode_2 (optional) number_nodes_in_section (optional) is_tip is_broken d_child d_parent
OUTPUT_DESCRIPTION
## Not run:
if(interactive()){
#EXAMPLE1
}
## End(Not run)
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