import_treestructs_from_dir: import_treestructs_from_dir

In ashenkin/treestruct: Provides Classes for Analysis and Manipulation of Tree Structure Models

Description

utility function to create treestruct dataframe that can be used to create a TreeStructs object

Usage

import_treestructs_from_dir(
  qsm_path = ".",
  recursive = F,
  qsmver = "by_name",
  qsmtype = c("by_ext", "QSMtree", "treegraph"),
  filematch_pattern = "(\\.mat)|(\\.json)",
  nest = F
)

Arguments

qsm_path	PARAM_DESCRIPTION, Default: '.'
recursive	PARAM_DESCRIPTION, Default: F
qsmver	PARAM_DESCRIPTION, Default: "by_name"
qsmtype	program used to create QSM - currently either QSMtree (.mat) or treegraph (.json). Default: "by_ext" (i.e., .mat = QSMtree, .json = treegraph)
filematch_pattern	regex filematch pattern (used in list.files), Default: "(\.mat)|(\.json)"
nest	nest cylinder dataframes in a column, Default: FALSE

Details

this function extracts the CylData elements of all the "*.mat" files in the indicated directory

Value

OUTPUT_DESCRIPTION

Examples

## Not run: 
if(interactive()){
 my_3d_trees = TreeStructs(dataset = "my_trees", treestructs = import_treestructs_from_dir("./qsm_files"))
 }

## End(Not run)

ashenkin/treestruct documentation built on Oct. 14, 2021, 1:54 a.m.