process_qsm_dir: process_qsm_dir

In ashenkin/treestruct: Provides Classes for Analysis and Manipulation of Tree Structure Models

Description

Runs analyze_cyl_file on all files in a directory

Usage

process_qsm_dir(
  qsm_path = ".",
  parallel_process = T,
  cyl_file_pat = "cyl.*.txt",
  rename_pat = "",
  recursive = F,
  file_batching = 0
)

Arguments

qsm_path	PARAM_DESCRIPTION
parallel_process	PARAM_DESCRIPTION, Default: T
cyl_file_pat	PARAM_DESCRIPTION, Default: 'cyl.*.txt'
rename_pat	Regex applied to filenames when naming ouput list elements (sub(rename_pat, '\1', filename))
recursive	PARAM_DESCRIPTION, Default: F
file_batching	Number of files to process per batch, or 0 to process all at once, Default: 0

Details

This routine provides a facility to name each element of the list based on the name of the corresponding cyl file. Use rename_pat parameter to customize the renaming. File batching can be used to avoid memory errors, etc

Value

list, one element per cyl file, of outputs from analyze_cyl_file

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

ashenkin/treestruct documentation built on Oct. 14, 2021, 1:54 a.m.