Man pages for ashiklom/edr-da
ED2 RTM testing functions
| allom_mu | Allometry mean vector |
| allom_Sigma | Allometry variance-covariance matrix |
| apply_filter_specfile | Apply single filter to spectra HDF5 data file |
| check_prior | Check prior for validity |
| combine_logical | Combine two logical vectors |
| cos_solar_zenith_angle | Cosine of solar zenith angle |
| create_prior | Create prior functions |
| dbh2h | Given DBH and PFT identity, calculate cohort height |
| ed_pft_mapping | Mapping to ED PFTs |
| edr_r | Run ED two-stream radiative transfer model |
| equation_of_time | For description of calculations, see... |
| filter_specfile | Extract spectral data from HDF5 file based on criteria |
| get_ipft | Get PFT index (starting from 1) of a PFT vector |
| get_merra_date | Download MERRA flux variables |
| get_pfts | Extract PFTs from css file |
| get_site_prefix | Get site prefix from site path and filename |
| hapke_soil | Simple model of soil reflectance as a function of soil... |
| l5bands | Landsat band centers, in nm |
| load_observations | Load AVIRIS observations into a list |
| params2edr | Convert named parameter vector to EDR-compatible inputs |
| pft_lookup | ED PFT lookup table |
| rallom1 | Univariate allometry prior (varying just the base) |
| rallom2 | Multivariate allometry prior (varying both base and exponent) |
| rclumping | Priors on other EDR parameters |
| reexports | Objects exported from other packages |
| ribbon | Ribbon plot |
| rmvnorm_positive | Draw only positive values from multivariate prior |
| run_edr_date | Run EDR for a single date |
| run_pda_edr | Run EDR parameter data assimilation |
| run_simulation_sail | Run SAIL simulation |
| sample_params_prior | Draw parameters from prior |
| sample_params_sail | Draw a random sample of PRO4SAIL parameters |
| size2bl | Calculate leaf biomass given DBH |
| spec2landsat | Convert full reflectance spectra to Landsat reflectance |
| spec_ci | Draw spectra confidence interval |
| sw_two_stream | R implementation of ED2 two-stream radiation model |
| texture_codes | USDA texture code conversion table |
| wai_allometry | Wood allometry |
| wallom_mu | Wood allometry mean vector |
| wallom_Sigma | Wood allometry variance-covariance matrix |
| with_prog | Adverb to add a progress bar to a function |
| wood_spectrum | Representative wood reflectance spectrum |
