Man pages for ashwini06/NEArender
Network Enrichment Analysis
| as_genes_fgs | Create single-gene FGS |
| benchmark | Benchmark networks using Network Enrichment Analysis (NEA) |
| can.sig.go | Example functional gene sets (FGS) from GO and KEGG |
| char2int | char2int function |
| char2int.fast | char2int function |
| connectivity | Connectivity |
| fantom5.43samples | A Fantom5 transcriptomes in 43 carincinoma cell samples |
| gsea.render | Gene Set Enrichment Analysis (GSEA) |
| import.gs | Read in an AGS or FGS test file |
| import.net | Import a network text file |
| mutations2ags | Create AGS from a mutation matrix |
| nea.render | Network Enrichment Analysis (NEA) |
| net.kegg | A more compact alternative global network for the network... |
| roc | ROC for NEA benchmarks |
| samples2ags | Create AGS from a raw data matrix. |
| save_gs_list | Create a TAB-delimited text file from AGS or FGS |
| set.heat | Plot a heatmap of NEA/GSEA output |
| tcga.gbm | NEArender |
| topology2nd | Higher order topology and correlation between node degrees |
