topology2nd: Higher order topology and correlation between node degrees

In ashwini06/NEArender: Network Enrichment Analysis

Description

Auxiliary function to estimate how non-random are associations of node degrees in network edges.

Usage

topology2nd(NET, Lowercase = 1, col.1 = 1, col.2 = 2, echo = 1,
  main = "Higher order topology")

Arguments

NET	Either a text network file or an R list imported with import.net
Lowercase	Render gene/protein IDs lower-case.
col.1	Number of the column in the input file that corresponds to node 1 (gene/protein ID).
col.2	Number of the column in the input file that corresponds to node 2 (gene/protein ID).
echo	if execution progress should be reported.
main	The plot title.

See Also

connectivity, benchmark

Examples

file <-  system.file("extdata", "Connectivity.FC1_full", package = "NEArender")

 topology2nd(NET=file)

ashwini06/NEArender documentation built on May 17, 2019, 6:39 p.m.