between_trial_change: Compare mean activity between trials

In atamalu/GCalcium: A Data Manipulation and Analysis Package for Calcium Indicator Data

Description

'between_trial_change' finds the difference in means during same time range between sets of trials.

Usage

between_trial_change(Dataframe, TrialRange1, TrialRange2,
  Time.period = c(min(Dataframe[1]), max(Dataframe[1])))

Arguments

Dataframe	a GCaMP-format data frame or matrix
TrialRange1	range of trial numbers to be compared to second set of trials
TrialRange2	range of trial numbers to be compared to first set of trials
Time.period	range of time to be compared between sets of trials

Value

Number representing mean difference of trial set 2 and trial set 1

Examples

# How much did the mean value change 2s after epoc between trials 1-5 and trials 6-10?
df.new <- format_data(data = GCaMP)
between_trial_change(Dataframe = df.new, TrialRange1 = c(1, 5),
TrialRange2 = c(6, 10), Time.period = c(0, 2))

atamalu/GCalcium documentation built on July 12, 2019, 7:04 p.m.