scores: chromstaR scores

In ataudt/chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Description

Various scores used in chromstaR.

Usage

differentialScoreMax(mat, info, FUN = "-")

differentialScoreSum(mat, info, FUN = "-")

Arguments

mat	A matrix with posterior probabilities, read counts or any other matrix with these dimensions. Column names must correspond to the ID entries in info.
info	An experiment.table with additional column 'ID'.
FUN	A function to compute the score with.

Value

A numeric vector.

Functions

• differentialScoreMax: Maximum differential score. Values are between 0 and 1. A value of 1 means that at least one mark is maximally different between conditions.

• differentialScoreSum: Additive differential score. Values are between 0 and N, where N is the number of marks. A value around 1 means that approximately 1 mark is different, a value of 2 means that 2 marks are different etc.

Author(s)

Aaron Taudt

ataudt/chromstaR documentation built on Dec. 26, 2021, 12:07 a.m.