subsample: Normalize read counts
In ataudt/chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Description
Usage
Arguments
Value
Author(s)
Description
Normalize read counts to a given read depth. Reads counts are randomly removed from the input to match the specified read depth.
Usage
1
subsample(binned.data, sample.reads)
Arguments
binned.data
A GRanges-class object with meta data column 'reads' that contains the read count.
sample.reads
The number of reads that will be retained.
Value
A GRanges-class object with downsampled read counts.
Author(s)
Aaron Taudt
ataudt/chromstaR documentation built on Dec. 26, 2021, 12:07 a.m.
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Description Usage Arguments Value Author(s)
Description
Normalize read counts to a given read depth. Reads counts are randomly removed from the input to match the specified read depth.
Usage
1 | subsample(binned.data, sample.reads)
|
Arguments
binned.data |
A |
sample.reads |
The number of reads that will be retained. |
Value
A GRanges-class object with downsampled read counts.
Author(s)
Aaron Taudt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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