Description Usage Arguments Value Note Author(s) See Also Examples
Calculates maximum LOD score for each chromosome of a
scanone
object, and position of that max on the chromosome
1 | maxlod(scan.out)
|
scan.out |
An object of class |
Returns list of
maxlod |
matrix of maximum LOD, made up of n rows and m columns,
where n is the number of chromosomes in |
maxlod.pos |
List with n vectors of m positions, where n is the
number of chromosmes in |
Output from is mainly used in subsequent functions
maxlod.sigpos
,peaks
, and findpeaks.traits
Karl W. Broman and Aimee Teo Broman
maxlod.sigpos
peaks
findpeaks.traits
1 2 3 4 5 | data(fake.f2expr)
fake.f2expr <- calc.genoprob(fake.f2expr)
scan.f2 <- scanone(fake.f2expr,pheno.col=1:100, method="hk")
maxlod.f2 <- maxlod(scan.f2)
|
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