maxlod.sigpos: Positions of Maximum LOD scores above a Threshold
In atbroman/neqtl: Tools for analyzing expression QTL by position on genome

Description Usage Arguments Value Author(s) References See Also Examples

A list of positions with maximum LOD scores above a threshold; a subset of the maxlod.pos output from the maxlod function. Mainly used in subsequent functions

1	maxlod.sigpos(maxlod.out, sig.lod = 5)

`maxlod.out`	List object, output from the `maxlod` function
`sig.lod`	Threshold used to determine significant LOD score, see `nullsims` function

List with n vectors of m1 positions, where n is the number of chromosmes in scanone and m1 is the number of traits with maximum LOD score above a given threshold

Karl W. Broman and Aimee Teo Broman

Jansen, Risert ??

maxlod neqtl findpeaks.traits peaks

data(fake.f2expr)
fake.f2expr <- calc.genoprob(fake.f2expr)

scan.f2 <- scanone(fake.f2expr,pheno.col=1:100, method="hk")
maxlod.f2 <- maxlod(scan.f2)
maxlod.sigpos(maxlod.f2,sig.lod=3)