get1status: Filters matrix based on single sample name condition

In athrom/CytobankAPIstats: Computes Signaling and Population Stats for Cytometry Data on Cytobank using 'CytobankAPI'

Description

Filters matrix based on single sample name condition

Usage

get1status(key, results)

Arguments

key	- Search string of interest for names
results	- Results matrix with fcs files corresponding to columns

Value

Returns a matrix with columns matching all search keys

Examples

#Example starting with obtaining data from Cytobank
library(CytobankAPI)
cyto_session <- authenticate(site="premium", username="myusername", password="mypassword")
markersofinterest<-c("CD3","CD56")
popsofinterest<-c("CD4 T cells","NK cells")
exptID=4
type=F
results<-analyzedata(cyto_session,markersofinterest,popsofinterest,exptID,type)
key<-c("Patient","Control")
get1status(key,results)

#Example with simple data matrix
data<-matrix(1:18,nrow=3,ncol=6,byrow=TRUE)
colnames(data)<-c("Ctrl1 unst","Pt1 unst","Pt3 unst","Ctrl1 stim","Pt1 stim","Pt3 stim")
rownames(data)<-c("Marker1","Marker2","Marker3")
#Getting all patient samples
get1status("Pt",data)
#Getting all patient and stimulated samples
get1status(c("Pt","stim"),data)

athrom/CytobankAPIstats documentation built on May 14, 2019, 5:24 p.m.