getrawsignals: Computes the untransformed medians for cellular markers in...

In athrom/CytobankAPIstats: Computes Signaling and Population Stats for Cytometry Data on Cytobank using 'CytobankAPI'

Description

Computes the untransformed medians for cellular markers in populations of interest

Usage

getrawsignals(cyto_session, markersofinterest, popsofinterest, exptID,
  markerorder, stimterms, ptterms)

Arguments

cyto_session	- API authentication token for session
markersofinterest	- List of strings of markers of interest, corresponding to names in Cytobank
popsofinterest	- List of strings of populations of interest to calculate statistics
exptID	- Integer representing an experiment ID on Cytobank account
markerorder	- A list of stings corresponding to the desired marker order
stimterms	- A list of desired stimulation conditions to analyze in matrix
ptterms	- A list of desired sample conditions to analyze in matrix

Value

- Returns matrix of untransformed medians for cellular markers in populations of interest

Examples

library(CytobankAPI)
cyto_session <- authenticate(site="premium", username="myusername", password="mypassword")
markersofinterest<-c("CD3","CD56")
popsofinterest<-c("CD4 T cells","NK cells")
exptID=4
markerorder<-c("CD4 T cells CD56","NK cells CD56","CD4 T cells CD3","NK cells CD3")
stimterms<-c("Unstim","IL-15")
ptterm<-c("Pt","Ctrl")
getrawsignals(cyto_session,markersofinterest,popsofinterest,exptID,markerorder,stimterms,
ptterms)

athrom/CytobankAPIstats documentation built on May 14, 2019, 5:24 p.m.