run_ipm: Run multi-species Integral Projection Model

In atredennick/community_synchrony: Calculates syunchrony and stability metrics from time series data

Description

Run multi-species Integral Projection Model

Usage

run_ipm(A = 10000, tlimit = 2500, burn_in = 500, spp_list, Nyrs,
  constant = FALSE, iter_matrix_dims, max_size, Rpars, Spars, Gpars,
  demographic_stochasticity = FALSE)

Arguments

A	Area of quadrat (cm X cm).
tlimit	Length of simulation.
burn_in	Number of years to discard before calculating things.
spp_list	Character vector with list of species for focal site.
Nyrs	Number of years represented in the yearly regression coefficients.
constant	TRUE/FALSE flag for simulating in a constant environment (no random year effects).
iter_matrix_dims	The size of the big matrix for each species.
max_size	Maximum size, in cm^2, for allowable for each species (in alphabetical order).
Rpars	Recruitment regression parameters for focal site and species.
Spars	Survival regression parameters for focal site and species.
Gpars	Recruitment regression parameters for focal site and species.
demographic_stochasticity	TRUE/FALSE flag for including demographic stoachasticity or not.

Author(s)

Andrew Tredennick

atredennick/community_synchrony documentation built on May 10, 2019, 2:10 p.m.