run_ipm: Run multi-species Integral Projection Model

Description Usage Arguments Author(s)

Description

Run multi-species Integral Projection Model

Usage

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run_ipm(A = 10000, tlimit = 2500, burn_in = 500, spp_list, Nyrs,
  constant = FALSE, iter_matrix_dims, max_size, Rpars, Spars, Gpars,
  demographic_stochasticity = FALSE)

Arguments

A

Area of quadrat (cm X cm).

tlimit

Length of simulation.

burn_in

Number of years to discard before calculating things.

spp_list

Character vector with list of species for focal site.

Nyrs

Number of years represented in the yearly regression coefficients.

constant

TRUE/FALSE flag for simulating in a constant environment (no random year effects).

iter_matrix_dims

The size of the big matrix for each species.

max_size

Maximum size, in cm^2, for allowable for each species (in alphabetical order).

Rpars

Recruitment regression parameters for focal site and species.

Spars

Survival regression parameters for focal site and species.

Gpars

Recruitment regression parameters for focal site and species.

demographic_stochasticity

TRUE/FALSE flag for including demographic stoachasticity or not.

Author(s)

Andrew Tredennick


atredennick/community_synchrony documentation built on May 10, 2019, 2:10 p.m.